Yes it will work. We run a X32 Rack as an IEM rig with our Avantis and connect the two consoles via Dante. You can run the SQ at 96k. You will run the Dante system at 48k and the SQ card will handle to conversion from 48k to 96 native.
Of course setting up the routing in the desk is only the first step. You also need to set up the routing in the Dante Controller. Nothing special if you are used to running Dante, but many beginners don’t understand this. If you haven’t taken the Dante training courses on the Audinate site, I highly suggest that you take them.