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Hmmm, not in front on my console to test this, but I wonder if they’re ganged it might effect it? Check in the Mixrack tab to see if there’s something ganged?
Also, when you say the same socket assignment, do you mean different channels sharing the same socket (physical input), or are you just talking about channels coming up on the board in more than one place (like, on different layers)?
Also worth checking if you’ve got a fader locked across layers maybe (like, a main vocal fader that’s frozen in layers)?

Adam Biggs
T80 surface & iDR48
MixPad for iPad & Tweak for iPhone apps
Asus N61 Laptop (x2 wireless)
Windows 7 Pro 64bit
with Belkin PlayMax N600 HD router
Dante card tracking into Reaper with playback via FooBar